Payout Reconciliation

Read-only: reconciles Shopify Payments payouts against the order transactions that funded them and flags amount discrepancies.

shopify-admin-payout-reconciliation


Purpose

Reconciles Shopify Payments payouts to the order transactions that contributed to them. For each payout, sums gross sales, refunds, adjustments, and fees, and compares the computed net to the payout's reported net amount. Discrepancies are flagged with a delta and the suspected cause. Read-only — no mutations.


Prerequisites

  • Authenticated Shopify CLI session: shopify store auth --store --scopes read_shopify_payments_payouts,read_orders
  • API scopes: read_shopify_payments_payouts, read_orders
  • Store must use Shopify Payments. If the store uses only third-party gateways, this skill exits cleanly with a message.

  • Parameters


    ParameterTypeRequiredDefaultDescription
    storestringyesStore domain (e.g., mystore.myshopify.com)
    days_backintegerno30Lookback window covering payouts issued in this period
    tolerancenumberno0.01Acceptable delta in store currency before flagging a discrepancy
    formatstringnohumanOutput format: human or json

    Safety


    > ℹ️ Read-only skill — no mutations are executed. Reconciliation output is informational; do not treat flagged discrepancies as confirmed errors before reviewing the underlying transactions in the Shopify admin.


    Workflow Steps


  • OPERATION: shopifyPaymentsAccount — query
  • Inputs: select payouts(first: 100, query: "issued_at:>=''") with id, issuedAt, status, net, gross, summary { chargesGross, chargesFee, refundsGross, refundsFee, adjustmentsGross, adjustmentsFee, retriedPayoutsGross, retriedPayoutsFee }

    Expected output: All payouts in the window. If account is null, exit — store does not use Shopify Payments.


  • For each payout, compute reconciliation expectation:
  • ```

    expected_net = chargesGross - chargesFee

  • refundsGross + refundsFee (refundsFee is normally negative / reversed)
  • + adjustmentsGross - adjustmentsFee

    + retriedPayoutsGross - retriedPayoutsFee

    ```

    delta = reported_net - expected_net


  • OPERATION: orders — query (only for flagged payouts to drill down)
  • Inputs: query: "transactions:'gateway:shopify_payments processed_at:>= processed_at:<='", first: 250

    Expected output: Candidate orders that may have contributed to the payout, used for an order-level cross-check on top discrepancies


  • Classify each payout:
  • ok if |delta| <= tolerance
  • discrepancy otherwise — record sign (positive: payout overpaid us; negative: payout underpaid)

  • Aggregate totals across the window: total payouts, total reconciled, total discrepancies, sum of absolute deltas

  • GraphQL Operations


    # shopifyPaymentsAccount:query — validated against api_version 2025-01
    query PayoutReconciliation($payoutQuery: String!, $payoutAfter: String) {
      shopifyPaymentsAccount {
        id
        payoutSchedule { interval }
        payouts(first: 100, after: $payoutAfter, query: $payoutQuery) {
          edges {
            node {
              id
              issuedAt
              status
              net { amount currencyCode }
              gross { amount currencyCode }
              summary {
                chargesGross { amount currencyCode }
                chargesFee { amount currencyCode }
                refundsFeeGross { amount currencyCode }
                refundsFee { amount currencyCode }
                adjustmentsGross { amount currencyCode }
                adjustmentsFee { amount currencyCode }
                retriedPayoutsGross { amount currencyCode }
                retriedPayoutsFee { amount currencyCode }
              }
            }
          }
          pageInfo { hasNextPage endCursor }
        }
      }
    }
    

    # orders:query — validated against api_version 2025-01
    query OrdersFundingPayout($query: String!, $after: String) {
      orders(first: 250, after: $after, query: $query) {
        edges {
          node {
            id
            name
            processedAt
            totalPriceSet { shopMoney { amount currencyCode } }
            totalReceivedSet { shopMoney { amount currencyCode } }
            transactions {
              id
              gateway
              kind
              status
              processedAt
              amountSet { shopMoney { amount currencyCode } }
            }
          }
        }
        pageInfo { hasNextPage endCursor }
      }
    }
    

    Session Tracking


    Claude MUST emit the following output at each stage. This is mandatory.


    On start, emit:

    ╔══════════════════════════════════════════════╗
    ║  SKILL: Payout Reconciliation                ║
    ║  Store: <store domain>                       ║
    ║  Started: <YYYY-MM-DD HH:MM UTC>             ║
    ╚══════════════════════════════════════════════╝
    

    After each step, emit:

    [N/TOTAL] <QUERY|MUTATION>  <OperationName>
              → Params: <brief summary of key inputs>
              → Result: <count or outcome>
    

    On completion, emit:


    For format: human (default):

    ══════════════════════════════════════════════
    PAYOUT RECONCILIATION  (<days_back> days)
      Payouts in window:    <n>
      Reconciled (ok):      <n>
      Discrepancies:        <n>   ⚠️
      Sum of abs deltas:    $<amount>
    
      Top discrepancies:
        Payout <date>  Reported: $<n>  Expected: $<n>  Δ: $<n>
    
      Output: payout_reconciliation_<date>.csv
    ══════════════════════════════════════════════
    

    For format: json, emit:

    {
      "skill": "payout-reconciliation",
      "store": "<domain>",
      "period_days": 30,
      "payouts_count": 0,
      "reconciled_count": 0,
      "discrepancy_count": 0,
      "sum_abs_delta": 0,
      "currency": "USD",
      "output_file": "payout_reconciliation_<date>.csv"
    }
    

    Output Format

    CSV file payout_reconciliation_.csv with columns:

    payout_id, issued_at, status, reported_net, expected_net, delta, currency, charges_gross, charges_fee, refunds_gross, refunds_fee, adjustments_gross, verdict


    Error Handling

    ErrorCauseRecovery
    THROTTLEDAPI rate limit exceededWait 2 seconds, retry up to 3 times
    shopifyPaymentsAccount is nullStore does not use Shopify PaymentsExit cleanly; suggest reconciling via the third-party gateway dashboard
    Currency mismatch within payoutMulti-currency storeReconcile only payouts in the presentment currency that matches account currency; flag others as currency_mismatch
    Payout still IN_TRANSITNot yet finalSkip — reconcile after status moves to PAID

    Best Practices

  • Run weekly on the morning after a payout is scheduled — same-day reconciliation catches discrepancies while transactions are easy to investigate.
  • For any flagged discrepancy, drill in: refunds processed inside the payout window often show up in the next payout's refundsGross, which can look like an underpayment if you forget to reconcile across windows.
  • Use this skill alongside your accounting export — these numbers should match your bookkeeping software's deposit records to the cent.
  • Tolerance > $0.01 should be used cautiously: anything above a few cents typically reflects a real fee or adjustment that deserves an explanation.
  • This skill does not detect fraud; it detects accounting deltas. If you suspect fraud, escalate via the Shopify admin's payout detail view.